Python Module Index

m


	m
	`MDAnalysis`
	`MDAnalysis.analysis.align`
	`MDAnalysis.analysis.base`
	`MDAnalysis.analysis.bat`
	`MDAnalysis.analysis.contacts`
	`MDAnalysis.analysis.data.filenames`
	`MDAnalysis.analysis.density`
	`MDAnalysis.analysis.diffusionmap`
	`MDAnalysis.analysis.dihedrals`
	`MDAnalysis.analysis.distances`
	`MDAnalysis.analysis.encore.bootstrap`
	`MDAnalysis.analysis.encore.clustering.affinityprop`
	`MDAnalysis.analysis.encore.clustering.cluster`
	`MDAnalysis.analysis.encore.clustering.ClusterCollection`
	`MDAnalysis.analysis.encore.clustering.ClusteringMethod`
	`MDAnalysis.analysis.encore.confdistmatrix`
	`MDAnalysis.analysis.encore.covariance`
	`MDAnalysis.analysis.encore.dimensionality_reduction.DimensionalityReductionMethod`
	`MDAnalysis.analysis.encore.dimensionality_reduction.reduce_dimensionality`
	`MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed`
	`MDAnalysis.analysis.encore.similarity`
	`MDAnalysis.analysis.encore.utils`
	`MDAnalysis.analysis.gnm`
	`MDAnalysis.analysis.hbonds.hbond_autocorrel`
	`MDAnalysis.analysis.helix_analysis`
	`MDAnalysis.analysis.hole2.hole`
	`MDAnalysis.analysis.hole2.templates`
	`MDAnalysis.analysis.hole2.utils`
	`MDAnalysis.analysis.hydrogenbonds.hbond_analysis`
	`MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel`
	`MDAnalysis.analysis.hydrogenbonds.wbridge_analysis`
	`MDAnalysis.analysis.leaflet`
	`MDAnalysis.analysis.legacy.x3dna`
	`MDAnalysis.analysis.lineardensity`
	`MDAnalysis.analysis.msd`
	`MDAnalysis.analysis.nuclinfo`
	`MDAnalysis.analysis.pca`
	`MDAnalysis.analysis.polymer`
	`MDAnalysis.analysis.psa`
	`MDAnalysis.analysis.rdf`
	`MDAnalysis.analysis.rms`
	`MDAnalysis.analysis.waterdynamics`
	`MDAnalysis.auxiliary.__init__`
	`MDAnalysis.auxiliary.base`
	`MDAnalysis.auxiliary.core`
	`MDAnalysis.auxiliary.XVG`
	`MDAnalysis.converters`
	`MDAnalysis.converters.OpenMM`
	`MDAnalysis.converters.OpenMMParser`
	`MDAnalysis.converters.ParmEd`
	`MDAnalysis.converters.ParmEdParser`
	`MDAnalysis.converters.RDKit`
	`MDAnalysis.converters.RDKitParser`
	`MDAnalysis.coordinates.__init__`
	`MDAnalysis.coordinates.base`
	`MDAnalysis.coordinates.chain`
	`MDAnalysis.coordinates.chemfiles`
	`MDAnalysis.coordinates.core`
	`MDAnalysis.coordinates.CRD`
	`MDAnalysis.coordinates.DCD`
	`MDAnalysis.coordinates.DLPoly`
	`MDAnalysis.coordinates.DMS`
	`MDAnalysis.coordinates.FHIAIMS`
	`MDAnalysis.coordinates.GMS`
	`MDAnalysis.coordinates.GRO`
	`MDAnalysis.coordinates.GSD`
	`MDAnalysis.coordinates.H5MD`
	`MDAnalysis.coordinates.INPCRD`
	`MDAnalysis.coordinates.LAMMPS`
	`MDAnalysis.coordinates.memory`
	`MDAnalysis.coordinates.MMTF`
	`MDAnalysis.coordinates.MOL2`
	`MDAnalysis.coordinates.NAMDBIN`
	`MDAnalysis.coordinates.null`
	`MDAnalysis.coordinates.PDB`
	`MDAnalysis.coordinates.PDBQT`
	`MDAnalysis.coordinates.PQR`
	`MDAnalysis.coordinates.TRJ`
	`MDAnalysis.coordinates.TRR`
	`MDAnalysis.coordinates.TRZ`
	`MDAnalysis.coordinates.TXYZ`
	`MDAnalysis.coordinates.XDR`
	`MDAnalysis.coordinates.XTC`
	`MDAnalysis.coordinates.XYZ`
	`MDAnalysis.core.__init__`
	`MDAnalysis.core.accessors`
	`MDAnalysis.core.groups`
	`MDAnalysis.core.selection`
	`MDAnalysis.core.topology`
	`MDAnalysis.core.topologyattrs`
	`MDAnalysis.core.topologyobjects`
	`MDAnalysis.core.universe`
	`MDAnalysis.exceptions`
	`MDAnalysis.lib`	``lib`` collects independent code for re-use in MDAnalysis
	`MDAnalysis.lib.c_distances`
	`MDAnalysis.lib.c_distances_openmp`
	`MDAnalysis.lib.correlations`
	`MDAnalysis.lib.distances`
	`MDAnalysis.lib.formats.libdcd`
	`MDAnalysis.lib.formats.libmdaxdr`
	`MDAnalysis.lib.log`
	`MDAnalysis.lib.mdamath`
	`MDAnalysis.lib.NeighborSearch`
	`MDAnalysis.lib.nsgrid`
	`MDAnalysis.lib.picklable_file_io`
	`MDAnalysis.lib.pkdtree`
	`MDAnalysis.lib.qcprot`
	`MDAnalysis.lib.transformations`
	`MDAnalysis.lib.util`
	`MDAnalysis.selections.base`
	`MDAnalysis.selections.charmm`
	`MDAnalysis.selections.gromacs`
	`MDAnalysis.selections.jmol`
	`MDAnalysis.selections.pymol`
	`MDAnalysis.selections.vmd`
	`MDAnalysis.topology.__init__`
	`MDAnalysis.topology.base`
	`MDAnalysis.topology.core`
	`MDAnalysis.topology.CRDParser`
	`MDAnalysis.topology.DLPolyParser`
	`MDAnalysis.topology.DMSParser`
	`MDAnalysis.topology.ExtendedPDBParser`
	`MDAnalysis.topology.FHIAIMSParser`
	`MDAnalysis.topology.GMSParser`
	`MDAnalysis.topology.GROParser`
	`MDAnalysis.topology.GSDParser`
	`MDAnalysis.topology.guessers`
	`MDAnalysis.topology.HoomdXMLParser`
	`MDAnalysis.topology.ITPParser`
	`MDAnalysis.topology.LAMMPSParser`
	`MDAnalysis.topology.MinimalParser`
	`MDAnalysis.topology.MMTFParser`
	`MDAnalysis.topology.MOL2Parser`
	`MDAnalysis.topology.PDBParser`
	`MDAnalysis.topology.PDBQTParser`
	`MDAnalysis.topology.PQRParser`
	`MDAnalysis.topology.PSFParser`
	`MDAnalysis.topology.tables`
	`MDAnalysis.topology.TOPParser`
	`MDAnalysis.topology.tpr`
	`MDAnalysis.topology.tpr.obj`
	`MDAnalysis.topology.tpr.setting`
	`MDAnalysis.topology.tpr.utils`
	`MDAnalysis.topology.TPRParser`
	`MDAnalysis.topology.TXYZParser`
	`MDAnalysis.topology.XYZParser`
	`MDAnalysis.transformations`
	`MDAnalysis.transformations.base`
	`MDAnalysis.transformations.boxdimensions`
	`MDAnalysis.transformations.fit`
	`MDAnalysis.transformations.positionaveraging`
	`MDAnalysis.transformations.rotate`
	`MDAnalysis.transformations.translate`
	`MDAnalysis.transformations.wrap`
	`MDAnalysis.units`
	`MDAnalysis.version`
	`MDAnalysis.visualization.streamlines`
	`MDAnalysis.visualization.streamlines_3D`