6.12. MMTF trajectory reader — MDAnalysis.coordinates.MMTF

Reads coordinates data from the Macromolecular Transmission Format format (MMTF). This should generally be a quicker alternative to PDB.

Added in version 0.16.0.

Changed in version 0.20.0: Unit cell is now properly treated as optional

6.12.1. Classes

class MDAnalysis.coordinates.MMTF.MMTFReader(filename, convert_units=True, n_atoms=None, **kwargs)

Coordinate reader for the Macromolecular Transmission Format format (MMTF).

Deprecated since version 2.8.0: The MMTF format is no longer supported / serviced by the Protein Data Bank. The Reader will be removed in version 3.0. Users are encouraged to instead use alternative PDB formats.