6.14. NAMDBIN files format — MDAnalysis.coordinates.NAMDBIN
Read/Write coordinates in NAMD double-precision binary format (suffix “coor” or “namdbin”).
6.14.1. Classes
- class MDAnalysis.coordinates.NAMDBIN.NAMDBINReader(filename, convert_units=True, n_atoms=None, **kwargs)[source]
Reader for NAMD binary coordinate files.
New in version 1.0.0.
- Writer(filename, **kwargs)[source]
Returns a NAMDBINWriter for filename.
- Parameters
filename (str) – filename of the output NAMDBIN file
- Return type
- static parse_n_atoms(filename, **kwargs)[source]
Read the coordinate file and deduce the number of atoms
- Returns
n_atoms – the number of atoms in the coordinate file
- Return type
- Raises
NotImplementedError – when the number of atoms can’t be deduced
- units = {'length': 'Angstrom'}
dict with units of of time and length (and velocity, force, … for formats that support it)
- class MDAnalysis.coordinates.NAMDBIN.NAMDBINWriter(filename, n_atoms=None, **kwargs)[source]
Writer for NAMD binary coordinate files.
New in version 1.0.0.
- Parameters
filename (str or
NamedStream) – name of the output file or a streamn_atoms (int) – number of atoms for the output coordinate
- units = {'length': 'Angstrom', 'time': None}
dict with units of of time and length (and velocity, force, … for formats that support it)