Source code for MDAnalysis.exceptions

# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
# MDAnalysis ---
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
# Released under the GNU Public Licence, v2 or any higher version
# Please cite your use of MDAnalysis in published work:
# R. J. Gowers, M. Linke, J. Barnoud, T. J. E. Reddy, M. N. Melo, S. L. Seyler,
# D. L. Dotson, J. Domanski, S. Buchoux, I. M. Kenney, and O. Beckstein.
# MDAnalysis: A Python package for the rapid analysis of molecular dynamics
# simulations. In S. Benthall and S. Rostrup editors, Proceedings of the 15th
# Python in Science Conference, pages 102-109, Austin, TX, 2016. SciPy.
# doi: 10.25080/majora-629e541a-00e
# N. Michaud-Agrawal, E. J. Denning, T. B. Woolf, and O. Beckstein.
# MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations.
# J. Comput. Chem. 32 (2011), 2319--2327, doi:10.1002/jcc.21787

Custom exceptions and warnings --- :mod:`MDAnalysis.exceptions`


[docs]class SelectionError(Exception): """Raised when a atom selection failed."""
[docs]class NoDataError(ValueError, AttributeError): """Raised when empty input is not allowed or required data are missing. .. versionchanged:: 1.0.0 Now a subclass of AttributeError as well as ValueError """
[docs]class ApplicationError(OSError): """Raised when an external application failed. The error code is specific for the application. .. versionadded:: 0.7.7 """
[docs]class SelectionWarning(Warning): """Warning indicating a possible problem with a selection."""
[docs]class MissingDataWarning(Warning): """Warning indicating is that required data are missing."""
[docs]class ConversionWarning(Warning): """Warning indicating a problem with converting between units."""
[docs]class FileFormatWarning(Warning): """Warning indicating possible problems with a file format."""
[docs]class StreamWarning(Warning): """Warning indicating a possible problem with a stream. :exc:`StreamWarning` is used when streams are substituted for simple access by filename (see in particular :class:`~MDAnalysis.lib.util.NamedStream`). This does not work everywhere in MDAnalysis (yet). """
[docs]class DuplicateWarning(UserWarning): """Warning indicating possible problems arising from an :class:`~MDAnalysis.core.groups.AtomGroup` / :class:`~MDAnalysis.core.groups.ResidueGroup` / :class:`~MDAnalysis.core.groups.SegmentGroup` containing duplicate :class:`Atoms<MDAnalysis.core.groups.Atom>` / :class:`Residues<MDAnalysis.core.groups.Residue>` / :class:`Segments<MDAnalysis.core.groups.Segment>`. .. versionadded:: 0.19.0 """