All modules for which code is available
- MDAnalysis.analysis.align
- MDAnalysis.analysis.base
- MDAnalysis.analysis.contacts
- MDAnalysis.analysis.density
- MDAnalysis.analysis.diffusionmap
- MDAnalysis.analysis.dihedrals
- MDAnalysis.analysis.distances
- MDAnalysis.analysis.encore.bootstrap
- MDAnalysis.analysis.encore.clustering.ClusterCollection
- MDAnalysis.analysis.encore.clustering.ClusteringMethod
- MDAnalysis.analysis.encore.clustering.affinityprop
- MDAnalysis.analysis.encore.clustering.cluster
- MDAnalysis.analysis.encore.confdistmatrix
- MDAnalysis.analysis.encore.covariance
- MDAnalysis.analysis.encore.cutils
- MDAnalysis.analysis.encore.dimensionality_reduction.DimensionalityReductionMethod
- MDAnalysis.analysis.encore.dimensionality_reduction.reduce_dimensionality
- MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed
- MDAnalysis.analysis.encore.similarity
- MDAnalysis.analysis.encore.utils
- MDAnalysis.analysis.gnm
- MDAnalysis.analysis.hbonds.hbond_analysis
- MDAnalysis.analysis.hbonds.hbond_autocorrel
- MDAnalysis.analysis.hbonds.wbridge_analysis
- MDAnalysis.analysis.hole
- MDAnalysis.analysis.hole2.hole
- MDAnalysis.analysis.hole2.utils
- MDAnalysis.analysis.hydrogenbonds.hbond_analysis
- MDAnalysis.analysis.leaflet
- MDAnalysis.analysis.legacy.x3dna
- MDAnalysis.analysis.lineardensity
- MDAnalysis.analysis.nuclinfo
- MDAnalysis.analysis.pca
- MDAnalysis.analysis.polymer
- MDAnalysis.analysis.psa
- MDAnalysis.analysis.rdf
- MDAnalysis.analysis.rms
- MDAnalysis.analysis.waterdynamics
- MDAnalysis.auxiliary.XVG
- MDAnalysis.auxiliary.base
- MDAnalysis.auxiliary.core
- MDAnalysis.coordinates.CRD
- MDAnalysis.coordinates.DCD
- MDAnalysis.coordinates.DLPoly
- MDAnalysis.coordinates.DMS
- MDAnalysis.coordinates.FHIAIMS
- MDAnalysis.coordinates.GMS
- MDAnalysis.coordinates.GRO
- MDAnalysis.coordinates.GSD
- MDAnalysis.coordinates.INPCRD
- MDAnalysis.coordinates.LAMMPS
- MDAnalysis.coordinates.MMTF
- MDAnalysis.coordinates.MOL2
- MDAnalysis.coordinates.NAMDBIN
- MDAnalysis.coordinates.PDB
- MDAnalysis.coordinates.PDBQT
- MDAnalysis.coordinates.PQR
- MDAnalysis.coordinates.ParmEd
- MDAnalysis.coordinates.TRJ
- MDAnalysis.coordinates.TRR
- MDAnalysis.coordinates.TRZ
- MDAnalysis.coordinates.TXYZ
- MDAnalysis.coordinates.XDR
- MDAnalysis.coordinates.XTC
- MDAnalysis.coordinates.XYZ
- MDAnalysis.coordinates.base
- MDAnalysis.coordinates.chain
- MDAnalysis.coordinates.chemfiles
- MDAnalysis.coordinates.core
- MDAnalysis.coordinates.memory
- MDAnalysis.coordinates.null
- MDAnalysis.core._get_readers
- MDAnalysis.core.groups
- MDAnalysis.core.selection
- MDAnalysis.core.topology
- MDAnalysis.core.topologyattrs
- MDAnalysis.core.topologyobjects
- MDAnalysis.core.universe
- MDAnalysis.exceptions
- MDAnalysis.lib.NeighborSearch
- MDAnalysis.lib._augment
- MDAnalysis.lib._cutil
- MDAnalysis.lib.correlations
- MDAnalysis.lib.distances
- MDAnalysis.lib.formats.libdcd
- MDAnalysis.lib.formats.libmdaxdr
- MDAnalysis.lib.log
- MDAnalysis.lib.mdamath
- MDAnalysis.lib.nsgrid
- MDAnalysis.lib.pkdtree
- MDAnalysis.lib.qcprot
- MDAnalysis.lib.transformations
- MDAnalysis.lib.util
- MDAnalysis.selections
- MDAnalysis.selections.base
- MDAnalysis.selections.charmm
- MDAnalysis.selections.gromacs
- MDAnalysis.selections.jmol
- MDAnalysis.selections.pymol
- MDAnalysis.selections.vmd
- MDAnalysis.topology.CRDParser
- MDAnalysis.topology.DMSParser
- MDAnalysis.topology.ExtendedPDBParser
- MDAnalysis.topology.FHIAIMSParser
- MDAnalysis.topology.GMSParser
- MDAnalysis.topology.GROParser
- MDAnalysis.topology.GSDParser
- MDAnalysis.topology.HoomdXMLParser
- MDAnalysis.topology.ITPParser
- MDAnalysis.topology.LAMMPSParser
- MDAnalysis.topology.MMTFParser
- MDAnalysis.topology.MOL2Parser
- MDAnalysis.topology.MinimalParser
- MDAnalysis.topology.PDBParser
- MDAnalysis.topology.PDBQTParser
- MDAnalysis.topology.PQRParser
- MDAnalysis.topology.PSFParser
- MDAnalysis.topology.ParmEdParser
- MDAnalysis.topology.TOPParser
- MDAnalysis.topology.TPRParser
- MDAnalysis.topology.TXYZParser
- MDAnalysis.topology.XYZParser
- MDAnalysis.topology.base
- MDAnalysis.topology.guessers
- MDAnalysis.topology.tables
- MDAnalysis.topology.tpr.obj
- MDAnalysis.topology.tpr.utils
- MDAnalysis.transformations.fit
- MDAnalysis.transformations.positionaveraging
- MDAnalysis.transformations.rotate
- MDAnalysis.transformations.translate
- MDAnalysis.transformations.wrap
- MDAnalysis.units
- MDAnalysis.visualization.streamlines
- MDAnalysis.visualization.streamlines_3D
- builtins
- gridData.core
- numpy